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In the laboratory setting, chemical disinfection is the most common method employed to decontaminate surfaces and disinfect waste liquids. In most laboratories,  dilutions of household bleach is the preferred method but there are many alternatives that may be considered and could be more appropriate for some agents or situations. There are numerous commercially available products that have been approved by the Environmental Protection Agency (EPA). EPA Registered Sterilizers, Tuberculocides, and Antimicrobial Products Against Certain Human Public Health Bacteria and Viruses can be found at  https://www.epa.gov/pesticideregistration/selected-epa-registered-disinfectants. Most EPA-registered disinfectants have a 10-minute label claim. However, OEHS Biosafety recommends a 15-20 minute contact time for disinfection/decontamination.

 

 

 

Prior to using a chemical disinfectant always consult the manufacturer’s instructions to determine the efficacy of the disinfectant against the biohazards in your lab and be sure to allow for sufficient contact time. In addition, consult the Safety Data Sheet for information regarding hazards, the appropriate protective equipment for handling the disinfectant and disposal of disinfected treated materials. Federal law requires all applicable label instructions on EPA-registered products to be followed (e.g., use-dilution, shelf life, storage, material compatibility, safe use, and disposal). Do not attempt to use a chemical disinfectant for a purpose it was not designed for.

  • When choosing a disinfectant consider the following:
  • The microorganisms present
  • The item to be disinfected or surface(s)
  • Corrosivity or hazards associated with the chemicals in the disinfectant
  • Ease of use

The innate characteristics of microorganisms often determine its sensitivity to chemical disinfection (Table 1). Some agents such as Cryptosporidium, Clostridium difficile, Bacillus spores and prions are very resistant to the usual disinfectants. EHS Biosafety is available to assist you in determining the appropriate disinfectant and provides guidance on use of appropriate disinfection techniques and materials for researchers.

Table 1. Sensitivity of Microorganisms to Chemical Disinfectants

 

Type of Microbe

Examples

More Resistant

Bacterial or Fungal Spores

Bacillus subtilis, Clostridium difficile/perfringens, Cryptococcus

Mycobacteria

Mycobacterium tuberculosis, Mycobacterium bovis

Hydrophilic Viruses (non-enveloped)

Coxsackievirus, Rhinovirus, Adenovirus, Poliovirus

Fungi

Aspergillus., Candida sp.

Vegetative Bacteria

Streptococcus pneumoniae, Staphylococcus aureus, E. coli, Pseudomonas spp., Klebsiella spp.

Less Resistant

Lipophilic Viruses (lipid containing, enveloped)

Herpes Simplex virus, Cytomegalovirus, HIV (Lentiviruses)

 

i. Chlorine Compounds (e.g., Household Bleach)

Chlorine compounds are good disinfectants on clean surfaces, but are quickly  inactivated by organic matter, thus, reducing their biocidal activity. They have a broad spectrum of antimicrobial activity and are inexpensive and fast acting. Hypochlorites, the most widely used of the chlorine disinfectants, are available in liquid (e.g., Sodium hypochlorite), household bleach and solid (e.g., calcium hypochlorite, sodium dichloroisocyanurate) forms. Household bleach has an available chlorine content of 5.25%, or 52,500 ppm. For most purposes, a 1:10 dilution of bleach (approximately 0.5% or 5,000 ppm sodium hypochlorite) is recommended in the laboratory. Because of its oxidizing power, diluted bleach loses potency quickly and should be made fresh and used within the same day it is prepared. Bleach should be diluted with cold water in order to prevent breakdown of the disinfectant. The free available chlorine levels of hypochlorite solutions in both opened and closed polyethylene containers are reduced to 40% to 50% of the original concentration over a period of one month at room temperature.

Bleach should be stored between 50 and 70°F. Undiluted household bleach has a shelf life of six months to one year from the date of manufacture, after which it degrades at a rate of 20% each year until totally degraded to salt and water, and a 1:10 bleach solution has a shelf life of 24 hours.

There are two potential occupational exposure hazards when using hypochlorite solutions. The first is the production of the carcinogen bis-chloromethyl ether when hypochlorite solutions come in contact with formaldehyde. The second is the rapid production of chlorine gas when hypochlorite solutions are mixed with an acid. Care must also be exercised in using chlorine–based disinfectants, which can corrode or damage metal, rubber, and other susceptible surfaces. Bleached articles should never be autoclaved without reducing the bleach with sodium thiosulfate or sodium bisulfate.


Chloramine T, which is prepared from sodium hypochlorite and p-toluenesulfonamide, is a more stable, odorless, less corrosive form of chlorine but has decreased biocidal activitiy in comparison to bleach.

ii. Iodophors (e.g. Wescodyne)

Iodophors are used both as antiseptics and disinfectants, typically at a concentration of 25-1600 ppm of titratable iodine: for Wescodyne the recommended final concentration is 75 to 150ppm. Wescodyne, Betadyne, Povidone-Iodine and other iodophors are commercially available Iodine-based disinfectants, which give good control when the manufacturer’s instructions for formulation and application are followed. Iodophors should be diluted in cold water in order to prevent breakdown of the disinfectant.

An iodophor is a combination of iodine and a solubilizing agent or carrier; the resulting complex provides a sustained-release reservoir of iodine and releases small amounts of free iodine in aqueous solution. Antiseptic iodophors are not suitable for use as hard-surface disinfectants because they contain significantly less free iodine than do those formulated as disinfectants.

Alcohols work through the disruption of cellular membranes, solubilization of lipids, and denaturation of proteins by acting directly on S-H functional groups. Ethyl and isopropyl alcohols are the two most widely used alcohols for their biocidal activity. These alcohols are effective against lipid-containing viruses and a broad spectrum of bacterial species, but ineffective against spore-forming bacteria and many non-enveloped viruses. They evaporate rapidly, which makes extended contact times difficult to achieve unless the items are
immersed.

The optimum bactericidal concentration for ethanol and isopropanol is in the range of 70% to 85% by volume. Their cidal activity drops sharply when diluted below 50% concentration. Absolute alcohol is also not very effective. They are used to clean sensitive equipment and are generally regarded as being non-corrosive.

Due to the evaporative nature of the solution, aqueous alcohol is not recommended as the primary disinfectant of spills, especially in areas with significant airflow, such as a Biosafety cabinet. For surface decontamination, a spray, wipe, spray approach is recommended to achieve the desired contact time.

i. Glutaraldehyde

Glutaraldehyde is a colorless liquid and has the sharp, pungent odor typical of all aldehydes,  with an odor threshold of 0.04 parts per million (ppm). It is capable of sterilizing equipment, though to effect sterilization  often requires many hours of exposure. Two percent solutions of glutaraldehyde exhibit very good activity against vegetative  bacteria, spores and viruses. It is ten times more effective than formaldehyde and less toxic. However, it must be limited and controlled because of its toxic properties and hazards. It is important to avoid skin contact with glutaraldehyde as it has been documented to cause  skin sensitization. Glutaraldehyde is also an inhalation hazard. The NIOSH ceiling threshold limit value is 0.2 ppm.

Cidex, a commercially prepared glutaraldehyde disinfectant is used routinely for cold surface sterilization of clinical  instruments. Glutaraldehyde disinfectants should always be used in accordance with the manufacturer’s directions.

ii. Formaldehyde:

Fomaldehyde and its polymerized solid paraformaldehyde have broad-spectrum biocidal activity and are both effective for surface and space decontamination. As a liquid (5% concentration), formaldehyde is an effective liquid decontaminant. Its  biocidal action is through alkylation of carboxyl, hydroxyl and sulfhydryl groups on proteins and the ring nitrogen atoms of  purine bases. Formaldehyde’s drawbacks are reduction in efficacy at refrigeration temperature, its pungent, irritating odor, and several safety concerns. Formaldehyde is presently considered to be a carcinogen or a cancer-suspect agent according to several regulatory agencies. The OSHA 8-hour time-weighted exposure limit is 0.75 ppm.

Quaternary ammonium compounds are generally odorless, colorless, nonirritating, and deodorizing. They also have some detergent action, and they are good disinfectants. However, some quaternary ammonium compounds activity is reduced in the presence of some soaps or soap residues, detergents, acids and heavy organic matter loads. They are generally ineffective against viruses, spores and Mycobacterium tuberculosis. Basically these compounds are not suitable for any type of terminal disinfection. They are typically diluted to 0.1 to 2%.

The mode of action of these compounds is through inactivation of energy producing enzymes, denaturation of essential cell proteins, and disruption of the cell membrane. Many of these compounds are better used in water baths, incubators, and other applications where halide or phenolic residues are not desired.

Phenolics are phenol (carbolaic acid) derivatives and typically used at 1- 5% dilutions. These biocides  act through membrane damage and are effective against enveloped viruses, rickettsiae, fungi and vegetative bacteria. They also retain more activity in the presence of organic material than other disinfectants. Cresols, hexachlorophene, alkyl- and chloro derivatives and diphenyls are more active than phenol itself. Available commercial products include Lysol, Pine-Sol, Amphyl, O-Syl, Tergisyl, Vesphene, and LpH se.

 
 

 

Table 2. Summary and Comparison of Liquid Disinfectants

Class

Recommended Use

How They Work

Advantages

Disadvantages

Comments & Hazards

Examples

Chlorine Compounds

Spills of human body fluids

Good against:

  • Vegetative Bacteria
  • Fungi
  • Enveloped Viruses
  • Non-enveloped Viruses

Good at >1000ppm Sodium Hypochlorite: Spores

Good with extended contact time:
Mycobacteria

Free available chlorine combines with contents within microorganism, reaction byproducts cause its death

Need 500 to 5000 ppm

Produce chemical combination with cell substances

Depends upon release of hypochlorous acid

Kills hardy viruses (e.g. hepatitis)

Kills a wide range of organisms

Inexpensive

Penetrates well

Relatively quick microbial kill

May be used on food prep surfaces

Tuberculocidal, with extended
contact time

Sporicidal: Some

Skin and eye irritant

Corrosive

Toxic

Bleach solutions (sodium
hypochlorite)

Clorox

Cyosan

Purex

Iodophors (Iodine with carrier)

Disinfecting some semicritical medical equipment

Very Good:

  • Fungi
  • Viruses
  • Bacteria
  • Some Spores

Good with extended contact time: Mycobacteria

Free iodine enters microorganism and binds with cellular components

Carrier helps penetrate soil/fat

Probably by disorder of protein synthesis due to hindrance and/or blocking of hydrogen bonding

Kills broad range of organisms

Highly reactive

Low tissue toxicity

Kills immediately rather than by prolonged period of stasis

Not affected by hard water

May be used on food prep surfaces

May stain plastics or corrode metal

May stain skin/laundry

Stains most materials

Odor

Some organic and inorganic
substances neutralize effect

Tuberculocidal, with  extended contact time

Sporicidal: Some

Flammable

Eye Irritant

Toxic

Wescodyne

Bactergent

Hy-Sine

Ioprep

Providone (iodine/betadine)

Alcohols

Cleaning some instruments

Cleaning skin

Good Against:

  • Vegetative Bacteria
  • Enveloped Viruses

Changes protein structure of  microorganism

Presence of water assists with killing action

Fairly inexpensive

< 50% or > 90% Solution not
very effective

Not active when organic matter present

Not active against certain types of viruses

Evaporates quickly

Contact time may not be sufficient for killing

Flammable

Eye Irritant

Toxic

70% Ethanol

Lysol® Neutra

Air® 2 in 1

Glutaraldehyde

Good Against:

  • Vegetative Bacteria
  • Fungi
  • Mycobacteria
  • Viruses
  • Spores

Coagulates cellular
proteins

Non-staining, relatively noncorrosive

Useable as a sterilant on plastics, rubber, lenses, stainless steel and other items that can’t be autoclaved

 

Eye, skin and respiratory irritant

Sensitizer

Toxic

Cidex

Calgocide 14

Vespore

Quaternary Ammonium compounds (QUATS)

Ordinary housekeeping (e.g. floors, furniture, walls)

Good Against:

  • Vegetative Bacteria
  • Enveloped Viruses
  • Fungi

Affects proteins and cell membrane of microorganism

Releases nitrogen and phosphorous from cells

Contains a detergent to help loosen soil

Rapid action

Colorless, odorless

Non-toxic, less corrosive

Highly stable

May be used on food prep surfaces

Does not eliminate spores, TB bacteria, some viruses

Effectiveness influenced by hard water

Layer of soap interferes  with action

Select from EPA list  of hospital  disinfectants

Skin and eye irritant

Toxic

Coverage 258

End-Bac

Hi Tor

Bacdown

Phenolic Compounds

Good Against:

  • Vegetative Bacteria
  • Fungi
  • Enveloped Viruses
  • Some non-enveloped Viruses
  • Mycobacteria

Gross protoplasmic  poison

Disrupts cell walls

Precipitates cell proteins

Low concentrations inactivate essential enzyme systems

Nonspecific concerning bactericidal and fungicidal action

When boiling water would cause rusting, the presence of  phenolic substances produces an antirusting effect

Unpleasant odor

Some areas have disposal restrictions

Effectiveness reduced by alkaline pH, natural soap or organic material

Not Sporicidal

Skin and eye irritant

Sensitizer

Corrosive

Toxic

Hil-Phene

LpH se

Metar

Vesphene

Decon-Cycle

 

 

 

 

Last Updated: 3/8/24